Code & Data


The code or data listed below were developed or collected by MLDA members. They are shared here for facilitating the research community. They can be freely used at your own risk, given that the contributions are appropriatedly cited or acknowledged in your publications.

Note: They can only be used for academic purpose. For other purposes, please contact with Dr. Yu(guoxian85@gmail.com;gxyu@swu.edu.cn).

Data



Code


  • NetBC
    Reference: Yu G, Yu X, Wang J. Network-aided Bi-Clustering for discovering cancer subtypes[J]. Scientific Reports, 2017, 7(1): 1046.

  • NoGOA
    Reference: Yu G, Chang L, Wang J. NoGOA: predicting noisy GO annotations using evidences and sparse representation[J]. Bmc Bioinformatics, 2017, 18:350.

  • NewGOA
    Reference: Yu G, Fu G, Wang J, et al. NewGOA: predicting new GO annotations of proteins by bi-random walks on a hybrid graph[J]. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, In Print.

  • MFLDA
    Reference: Guangyuan Fu, Jun Wang, Carlotta Domeniconi, Guoxian Yu*. Matrix factization based data fusion f the prediction of lncRNA-disease associations, Bioinfmatics, 2018 May 1;34(9):1529-1537.

  • DRW
    Reference: Guoxian Yu, Hailong Zhu, Carlotta Domeniconi, Jiming Liu. Predicting protein function via downward random walks on a gene ontology, BMC Bioinformatics (CCF Rank C), 2015, 16: 271.

  • SimNet
    Reference: Guoxian Yu*, Guangyuan Fu+, Jun Wang, Hailong Zhu. Predicting Protein Function via Semantic Integration of Multiple Networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 2016, 13(2): 220-232.

  • PILL
    Reference: Guoxian Yu, Hailong Zhu, Carlotta Domeniconi. Predicting Protein Function using Incomplete Hierarchical Labels, BMC Bioinformatics (CCF Rank C), 2015, 16: 1.

  • MNet
    Reference: Guoxian Yu, Hailong Zhu, Carlotta Domeniconi, Maozu Guo. Integrating Multiple Networks for Protein Function Prediction, BMC Systems Biology, 2015, 9(S1): S3.

  • ProMK
    Reference: Guoxian Yu, Huzefa Rangwala, Carlotta Domeniconi, Guoji Zhang, Zili Zhang. Predicting Protein Function using Multiple Kernels, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) (CCF Rank C), 2015, 12(1): 219-233.

  • TMEC
    Reference: Guoxian Yu, Huzefa Rangwala, Carlotta Domeniconi, Guoji Zhang, Zhiwen Yu. Protein Function Prediction using Multi-label Ensemble Classification, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) (CCF Rank C), 2013, 10(4): 1045-1057.

  • MLCT
    Reference: Yuying Xing+, Guoxian Yu*, Carlotta Domeniconi, Jun Wang, Zili Zhang. Multi-Label Co-Training, 27th International Joint Conference on Artificial Intelligence(IJCAI), In Print.

  • iMVWL
    Reference: Qiaoyu Tan+, Guoxian Yu*, Carlotta Domeniconi, Jun Wang, Zili Zhang. Incomplete Multi-View Weak-Label Learning, 27th International Joint Conference on Artificial Intelligence(IJCAI), In Print.